As I do programming exclusively on RNA/DNA-seq experiments bioinformatics analysis, all of the softwares I wrote are mainly focus on this aspect.
This is a python package that contains many of my day-to-day scripts and function for manuipulating SAM/BAM, Fastq, BED files from high-throughput genomic data.
This is an shiny app to help designing unique molecular identifiers (UMI) primers. Backend of the app used poisson distribution to estimate how many times the barcode collision would occur. Idea from Nicholas C. Wu
This is a R package that I wrote to speed up FDR control in multiple hypothesis testing. Vignettes is available here.
The package can be install via devtools.
devtools::install_github('wckdouglas/fdrcontrol')