PUBLICATIONS
Preprint
- Yao J, Xu H, Wu DC, Ares M, Lambowitz AM (Preprint). Human cells contain myriad excised linear intron RNAs with potential functions in gene regulation and utility as disease biomarkers. bioRxiv.
- Lamers MM, Breugem TI, Mykytyn AZ, Wang Y, Groen N, Knoops K, Schipper D, van der Vaart J, Koopman CD, Zhang J, Wu DC, van den Doel PB, Bestebroer T, GeurtsvanKessel CH, Peters PJ, Muraro MJ, Clevers H, Wu NC, Haagmans BL (Preprint). Human organoid systems reveal in vitro correlates of fitness for SARS-CoV-2 B.1.1.7. bioRxiv.
2021
- Lamers MM, Mykytyn AZ, Breugem TI, Wang Y, Wu DC, Riesebosch S, van den Doel PB, Schipper D, Bestebroer T, Wu NC, Haagmans BL (2021). Human airway cells prevent SARS-CoV-2 multibasic cleavage site cell culture adaptation. eLife.
2020
- Yao J*, Wu DC*, Nottingham RM, and Lambowitz AM (2020). Identification of protein-protected mRNA fragments and structured excised intron RNAs in human plasma by TGIRT-seq peak calling. eLife.
2020(9):e60743 (*contributed equally)
2019
- Wu NC, Lv H, Thompson AJ, Wu DC, Ng WWS, Kadam RU, Lin CW, Nycholat CM, McBride R, Liang W, Paulson JC, Mok CKP, and Wilson IA (2019). Preventing an antigenically disruptive mutation in egg-based H3N2 seasonal Influenza Vaccines by Mutational Incompatibility. Cell Host & Microbe.
25(6):836-844
- Xu H*, Yao J*, Wu DC*, and Lambowitz AM (2019). Improved TGIRT-seq methods for comprehensive transcriptome profiling with decreased adapter dimer formation and bias correction. Scientific Reports.
9:7953 (*contributed equally)
2018
- Wu DC, Yao J, Ho KS, Lambowitz AM, and Wilke CO (2018). Limitations of alignment-free tools in total RNA-seq quantification. BMC Genomics.
19:510
- Guan W*, Wu NC*, Lee HHY, Li Y, Jiang W, Shen L, Wu DC, Chen R, Zhong N, Wilson IA, Peiris M, Yang Z, and Mok CKP (2018). Clinical correlations of transcriptional profile in patients Infected with avian influenza H7N9 virus. The Journal of Infectious Diseases.
jiy317 (*contributed equally)
2017
- Wu DC and Lambowitz AM (2017). Facile single-stranded DNA sequencing of human plasma DNA via thermostable group II intron reverse transcriptase template switching. Scientific Reports.
7:8421
2016
- Nottingham RM*, Wu DC*, Qin Y, Yao J, Hunicke-Smith S, and Lambowitz AM (2016). RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase. RNA.
22(4):597-613 (*contributed equally)
- Qin Y*, Yao J*, Wu DC, Nottingham RM, Mohr S, Hunicke-Smith S, and Lambowitz AM (2016). High-throughput sequencing of human plasma RNA by using thermostable group II intron reverse transcriptases. RNA.
22(1):111-128 (*contributed equally)
2014
- Geuss LR, Wu DC, Ramamoorthy D, Alford CD, and Suggs LJ (2014). Paramagnetic beads and magnetically mediated strain enhance cardiomyogenesis in mouse embryoid bodies. PLoS ONE.
9(12):e113982
- Tan Y, Tajik A, Chen J, Jia Q, Chowdhury F, Wang L, Chen J, Zhang S, Hong Y, Yi H, Wu DC, Zhang Y, Wei F, Poh YC, Seong J, Singh R, Lin L, Doganay S, Li Y, Jia H, Ha TJ, Wang Y, Huang B, and Wang N (2014). Matrix softness regulates plasticity of tumour-repopulating cells via H3K9 demethylation and Sox2 expression. Nature Communication.
5:4619
- Poh YC, Chen J, Hong Y, Yi H, Zhang S, Chen J, Wu DC, Wang L, Jia Q, Singh R, Yao W, Tan Y, Tajik A, Tanaka TS, and Wang N (2014). Generation of organized mouse germ layers from single embryonic stem cell. Nature Communication.
5:4000
2012
- Poh YC, Shevtsov SP, Chowdhury F, Wu DC, Na S, Dundr M, and Wang N (2012). Dynamic force-induced direct dissociation of protein complexes in a nuclear body in living cells. Nature Communication.
3:866
2011
- Uda Y, Poh YC, Chowdhury F, Wu DC, Tanaka TS, Sato M, and Wang N (2011). Force via integrins but not E-cadherin decreases Oct3/4 expression in embryonic stem cells. Biochemical and Biophysical Research Communications.
415(2):396-400
- Wu DC and Waye M. (2011). The relationship between MicroRNA and tumor suppressors. Tumor Suppressors Nova Science.
175-188
